RCSB PDB data API

3 endpoints for RCSB PDB: search, record, entity. One API key, one JSON schema, as MCP tools or REST.

Endpoints

Call any of them over MCP with call_endpoint and its path, or over REST.

Endpoint	Returns	Credits	Cache
searchGET /v1/rcsb_pdb/search	Protein Data Bank structures matching a text query, with title, method and resolution.	1	2 min
recordGET /v1/rcsb_pdb/record	One RCSB PDB record: title, creators, type, doi, license and download counts.	1	10 min
entityGET /v1/rcsb_pdb/entity	One RCSB PDB entity: label, description, key claims with resolved labels, and sitelinks.	1	15 min

Connect your agent over MCP

Remote MCP server: https://data.openkrill.app/mcp with your key in the x-api-key header.

Claude Code · Run in a terminal

claude mcp add --transport http krilldata \
  https://data.openkrill.app/mcp \
  --header "x-api-key: YOUR_API_KEY"

Cursor · Add to ~/.cursor/mcp.json

{
  "mcpServers": {
    "krilldata": {
      "url": "https://data.openkrill.app/mcp",
      "headers": {
        "x-api-key": "YOUR_API_KEY"
      }
    }
  }
}

Claude Desktop · Add to claude_desktop_config.json

{
  "mcpServers": {
    "krilldata": {
      "command": "npx",
      "args": [
        "-y",
        "mcp-remote",
        "https://data.openkrill.app/mcp",
        "--header",
        "x-api-key:${API_KEY}"
      ],
      "env": {
        "API_KEY": "YOUR_API_KEY"
      }
    }
  }
}